Examlex
Below are the DNA sequences from four hypothetical species of bacteria.
Species 1: AGAGAATCTGCCATGAACTGA
Species 2: AGAGAGTCTGCGCATGCACTGA
Species 3: AGAAAGTGTCAGCGGATGCACTCA
Species 4: AGAAAGTGTCAGCGCATGCACTCA
Align the sequences and construct a similarity matrix.Consider gaps of any length to be equivalent to two nucleotide differences.If two species share a gap, do not consider that a similarity.Write the similarities in the lower diagonal of the similarity matrix, and the differences in the upper diagonal.
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